Aussie AI

RAG Ontology Architectures

Last Updated 22 October, 2025

by David Spuler, Ph.D.

Research on RAG Ontology Architectures

Research papers include:

Prajwal Kailas, Max Homilius, Rahul C. Deo, Calum A. MacRae, 16 Dec 2024, NoteContrast: Contrastive Language-Diagnostic Pretraining for Medical Text, https://arxiv.org/abs/2412.11477
Muhayy Ud Din, Jan Rosell, Waseem Akram, Isiah Zaplana, Maximo A Roa, Lakmal Seneviratne, Irfan Hussain, 10 Dec 2024, Ontology-driven Prompt Tuning for LLM-based Task and Motion Planning, https://arxiv.org/abs/2412.07493 https://muhayyuddin.github.io/llm-tamp/ (Detecting objects in the prompt text and then using a RALM algorithm to query an ontology database.)
Oleksandr Palagin, Vladislav Kaverinskiy, Anna Litvin, Kyrylo Malakhov, 11 Jul 2023, OntoChatGPT Information System: Ontology-Driven Structured Prompts for ChatGPT Meta-Learning, International Journal of Computing, 22(2), 170-183, https://arxiv.org/abs/2307.05082 https://doi.org/10.47839/ijc.22.2.3086 https://computingonline.net/computing/article/view/3086
Alhassan Mumuni, Fuseini Mumuni, 6 Jan 2025, Large language models for artificial general intelligence (AGI): A survey of foundational principles and approaches, https://arxiv.org/abs/2501.03151
Kartik Sharma, Peeyush Kumar, Yunqing Li, 12 Dec 2024, OG-RAG: Ontology-Grounded Retrieval-Augmented Generation For Large Language Models, https://arxiv.org/abs/2412.15235
Chengshuai Zhao, Garima Agrawal, Tharindu Kumarage, Zhen Tan, Yuli Deng, Ying-Chih Chen, Huan Liu, 10 Dec 2024, Ontology-Aware RAG for Improved Question-Answering in Cybersecurity Education, https://arxiv.org/abs/2412.14191
Ramona Kühn, Jelena Mitrović, Michael Granitzer, 18 Dec 2024, Enhancing Rhetorical Figure Annotation: An Ontology-Based Web Application with RAG Integration, https://arxiv.org/abs/2412.13799
Xueli Pan, Jacco van Ossenbruggen, Victor de Boer, Zhisheng Huang, 13 Sep 2024, A RAG Approach for Generating Competency Questions in Ontology Engineering, https://arxiv.org/abs/2409.08820
Rafael Teixeira de Lima, Shubham Gupta, Cesar Berrospi, Lokesh Mishra, Michele Dolfi, Peter Staar, Panagiotis Vagenas, 29 Nov 2024, Know Your RAG: Dataset Taxonomy and Generation Strategies for Evaluating RAG Systems, https://arxiv.org/abs/2411.19710
Yuxing Lu, Sin Yee Goi, Xukai Zhao, Jinzhuo Wang, 22 Jan 2025 (v2), Biomedical Knowledge Graph: A Survey of Domains, Tasks, and Real-World Applications, https://arxiv.org/abs/2501.11632
Battazza, I. F. C., Rodrigues, C. M. d. O., & Oliveira, J. F. L. d. (2025). A Framework for Market State Prediction with Ontological Asset Selection: A Multimodal Approach. Applied Sciences, 15(3), 1034. https://doi.org/10.3390/app15031034 https://www.mdpi.com/2076-3417/15/3/1034
AD Al Hauna, AP Yunus, M Fukui, S Khomsah - International Journal on Robotics, Apr 2025, Enhancing LLM Efficiency: A Literature Review of Emerging Prompt Optimization Strategies, https://doi.org/10.33093/ijoras.2025.7.1.9 https://mmupress.com/index.php/ijoras/article/view/1311 PDF: https://mmupress.com/index.php/ijoras/article/view/1311/834
Jean-Philippe Corbeil, Amin Dada, Jean-Michel Attendu, Asma Ben Abacha, Alessandro Sordoni, Lucas Caccia, François Beaulieu, Thomas Lin, Jens Kleesiek, Paul Vozila, 15 May 2025, A Modular Approach for Clinical SLMs Driven by Synthetic Data with Pre-Instruction Tuning, Model Merging, and Clinical-Tasks Alignment, https://arxiv.org/abs/2505.10717
Junde Wu, Jiayuan Zhu, Yunli Qi, Jingkun Chen, Aug 2025, Min Xu, Filippo Menolascina, Yueming Jin, Vicente Grau, Medical Graph RAG: Evidence-based Medical Large Language Model via Graph Retrieval-Augmented Generation, Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), pages 28443–28467 July 27- August 1, 2025, https://aclanthology.org/2025.acl-long.1381.pdf
Ziheng Zhang, Zhenxi Lin, Yefeng Zheng, and Xian Wu. 2025. How much Medical Knowledge do LLMs have? An Evaluation of Medical Knowledge Coverage for LLMs. In Proceedings of the ACM on Web Conference 2025 (WWW '25). Association for Computing Machinery, New York, NY, USA, 5330–5341. https://doi.org/10.1145/3696410.3714535 https://dl.acm.org/doi/abs/10.1145/3696410.3714535 https://dl.acm.org/doi/pdf/10.1145/3696410.3714535
Yan Ting Chok, Soyon Park, Seungheun Baek, Hajung Kim, Junhyun Lee, Jaewoo Kang, 14 Aug 2025, HiRef: Leveraging Hierarchical Ontology and Network Refinement for Robust Medication Recommendation, https://arxiv.org/abs/2508.10425
Yiping Song, Jiaoyan Chen and Renate A. Schmidt, 14 Aug 2025, GenOM: Ontology Matching with Description Generation and Large Language Model, https://arxiv.org/abs/2508.10703
Qing Cheng, Zefan Zeng, Xingchen Hu, Yuehang Si, Zhong Liu, 23 Jul 2025, A Survey of Event Causality Identification: Taxonomy, Challenges, Assessment, and Prospects, https://arxiv.org/abs/2411.10371
Stefan Borgwardt, Duy Nhu, Gabriele R\"oger, 23 Jul 2025, Automated planning with ontologies under coherence update semantics (Extended Version), https://arxiv.org/abs/2507.15120
Lam Nguyen and Erika Barcelos and Roger French and Yinghui Wu, 18 Jul 2025, KROMA: Ontology Matching with Knowledge Retrieval and Large Language Models, https://arxiv.org/abs/2507.14032
Oussama Bouaggad, Natalia Grabar, 18 Jul 2025, Search-Optimized Quantization in Biomedical Ontology Alignment, https://arxiv.org/abs/2507.13742
Hui Yang, Jiaoyan Chen, Yuan He, Yongsheng Gao, Ian Horrocks, 18 Jul 2025, Language Models as Ontology Encoders, https://arxiv.org/abs/2507.14334
Anna Sofia Lippolis, Mohammad Javad Saeedizade, Robin Keskis\"arkk\"a, Aldo Gangemi, Eva Blomqvist, Andrea Giovanni Nuzzolese, 19 Jul 2025, Large Language Models Assisting Ontology Evaluation, https://arxiv.org/abs/2507.14552
Ritesh Chandra, Shashi Shekhar Kumar, Rushil Patra, Sonali Agarwal, 21 Jul 2025, Decision support system for Forest fire management using Ontology with Big Data and LLMs, https://arxiv.org/abs/2405.11346
Devichand Budagam, Ashutosh Kumar, Mahsa Khoshnoodi, Sankalp KJ, Vinija Jain, Aman Chadha, 21 Jul 2025, Hierarchical Prompting Taxonomy: A Universal Evaluation Framework for Large Language Models Aligned with Human Cognitive Principles, https://arxiv.org/abs/2406.12644
Soumen Sinha, Tanisha Rana, Rahul Roy, 22 Jul 2025, A novel approach to navigate the taxonomic hierarchy to address the Open-World Scenarios in Medicinal Plant Classification, https://arxiv.org/abs/2502.17289
Maurice Funk, Marvin Grosser, Carsten Lutz, 11 Aug 2025, Fitting Description Logic Ontologies to ABox and Query Examples, https://arxiv.org/abs/2508.08007
Xiaohua Feng,Jiaming Zhang,Fengyuan Yu,Chengye Wang,Li Zhang,Kaixiang Li,Yuyuan Li,Chaochao Chen,Jianwei Yin, 26 Jul 2025, A Survey on Generative Model Unlearning: Fundamentals, Taxonomy, Evaluation, and Future Direction, https://arxiv.org/abs/2507.19894
Md Fantacher Islam, Jarrod Mosier, Vignesh Subbian, 26 Jul 2025, NIRS: An Ontology for Non-Invasive Respiratory Support in Acute Care, https://arxiv.org/abs/2507.19992
Joydeep Chandra and Satyam Kumar Navneet, 26 Jul 2025, Policy-Driven AI in Dataspaces: Taxonomy, Explainability, and Pathways for Compliant Innovation, https://arxiv.org/abs/2507.20014
Wenbin Guo, Xin Wang, Jiaoyan Chen, Zhao Li and Zirui Chen, 28 Jul 2025, Ontology-Enhanced Knowledge Graph Completion using Large Language Models, https://arxiv.org/abs/2507.20643
Federico Donato and Adrien Barton, 26 Jul 2025, An ontological analysis of risk in Basic Formal Ontology, https://arxiv.org/abs/2507.21171
Vishal Raman, Vijai Aravindh R, 29 Jul 2025, Evo-DKD: Dual-Knowledge Decoding for Autonomous Ontology Evolution in Large Language Models, https://arxiv.org/abs/2507.21438
Sabrina Patania, Luca Annese, Cansu Koyuturk, Azzurra Ruggeri, Dimitri Ognibene, 25 May 2025, Dialogic Social Learning for Artificial Agents: Enhancing LLM Ontology Acquisition through Mixed-Initiative Educational Interactions, https://arxiv.org/abs/2507.21065
Meghyn Bienvenu, Diego Figueira, Pierre Lafourcade, 31 Jul 2025, Tractable Responsibility Measures for Ontology-Mediated Query Answering, https://arxiv.org/abs/2507.23191
Zhangcheng Qiang, Kerry Taylor, Weiqing Wang, Jing Jiang, 25 Mar 2025, OAEI-LLM-T: A TBox Benchmark Dataset for Understanding Large Language Model Hallucinations in Ontology Matching, https://arxiv.org/abs/2503.21813
Renato Vukovic, Carel van Niekerk, Michael Heck, Benjamin Ruppik, Hsien-Chin Lin, Shutong Feng, Nurul Lubis, Milica Gasic, 31 Jul 2025, Text-to-SQL Task-oriented Dialogue Ontology Construction, https://arxiv.org/abs/2507.23358
Haonan Bian, Yutao Qi, Rui Yang, Yuanxi Che, Jiaqian Wang, Heming Xia, Ranran Zhen, 2 Aug 2025, From Query to Logic: Ontology-Driven Multi-Hop Reasoning in LLMs, https://arxiv.org/abs/2508.01424
Manuel Cossio, 3 Aug 2025, A comprehensive taxonomy of hallucinations in Large Language Models, https://arxiv.org/abs/2508.01781
Yuki Yamagata, Koji Kyoda, Hiroya Itoga, Emi Fujisawa and Shuichi Onami, 4 Aug 2025, SSBD Ontology: A Two-Tier Approach for Interoperable Bioimaging Metadata, https://arxiv.org/abs/2508.02084
Haoran Sun, Yusen Wu, Peng Wang, Wei Chen, Yukun Cheng, Xiaotie Deng, Xu Chu, 5 Aug 2025, Game Theory Meets Large Language Models: A Systematic Survey with Taxonomy and New Frontiers, https://arxiv.org/abs/2502.09053
Alessia Pisu, Livio Pompianu, Francesco Osborne, Diego Reforgiato Recupero, Daniele Riboni, Angelo Salatino, 6 Aug 2025, A Hybrid AI Methodology for Generating Ontologies of Research Topics from Scientific Paper Corpora, https://arxiv.org/abs/2508.04213
Yuyang Liu, Qiuhe Hong, Linlan Huang, Alexandra Gomez-Villa, Dipam Goswami, Xialei Liu, Joost van de Weijer, Yonghong Tian, 6 Aug 2025, Continual Learning for VLMs: A Survey and Taxonomy Beyond Forgetting, https://arxiv.org/abs/2508.04227
Sigma Jahan, Saurabh Singh Rajput, Tushar Sharma, Mohammad Masudur Rahman, 6 Aug 2025, Taxonomy of Faults in Attention-Based Neural Networks, https://arxiv.org/abs/2508.04925
Anouk Oudshoorn, Magdalena Ortiz, Mantas Simkus, 16 Jul 2025, SHACL Validation in the Presence of Ontologies: Semantics and Rewriting Techniques, https://arxiv.org/abs/2507.12286
Sviatoslav Lushnei, Dmytro Shumskyi, Severyn Shykula, Ernesto Jimenez-Ruiz, Artur d'Avila Garcez, 11 Aug 2025, Large Language Models as Oracles for Ontology Alignment, https://arxiv.org/abs/2508.08500
Amir Mohammad Salehoof, Ali Ramezani, Yadollah Yaghoobzadeh, Majid Nili Ahmadabadi, 12 Aug 2025, A Dual-Axis Taxonomy of Knowledge Editing for LLMs: From Mechanisms to Functions, https://arxiv.org/abs/2508.08795
Farzana Zahid, Anjalika Sewwandi, Lee Brandon, Vimal Kumar, Roopak Sinha, 12 Aug 2025, Securing Educational LLMs: A Generalised Taxonomy of Attacks on LLMs and DREAD Risk Assessment, https://arxiv.org/abs/2508.08629
Jiawei Zhou, Amy Z. Chen, Darshi Shah, Laura M. Schwab Reese, and Munmun De Choudhury, 11 Aug 2025, A Risk Taxonomy and Reflection Tool for Large Language Model Adoption in Public Health, https://arxiv.org/abs/2411.02594
David J. Moore, 18 Aug 2025, A Taxonomy of Hierarchical Multi-Agent Systems: Design Patterns, Coordination Mechanisms, and Industrial Applications, https://arxiv.org/abs/2508.12683
Zabir Al Nazi, Vagelis Hristidis, Aaron Lawson McLean, Jannat Ara Meem and Md Taukir Azam Chowdhury, 15 Aug 2025, Ontology-Guided Query Expansion for Biomedical Document Retrieval using Large Language Models, https://arxiv.org/abs/2508.11784
Simon Hosemann, Jean Christoph Jung, Carsten Lutz, Sebastian Rudolph, 11 Aug 2025, Fitting Ontologies and Constraints to Relational Structures, https://arxiv.org/abs/2508.13176
Hui Wei, Dong Yoon Lee, Shubham Rohal, Zhizhang Hu, Ryan Rossi, Shiwei Fang, Shijia Pan, 21 Aug 2025, A Survey of Foundation Models for IoT: Taxonomy and Criteria-Based Analysis, https://arxiv.org/abs/2506.12263
Runxuan Liu, Bei Luo, Jiaqi Li, Baoxin Wang, Ming Liu, Dayong Wu, Shijin Wang, Bing Qin, 21 Aug 2025, Ontology-Guided Reverse Thinking Makes Large Language Models Stronger on Knowledge Graph Question Answering, https://arxiv.org/abs/2502.11491
John Beverley and Danielle Limbaugh, 26 Jul 2025, Ontological Foundations of State Sovereignty, https://arxiv.org/abs/2507.21172
Michael Banf and Johannes Kuhn, 22 Aug 2025, Tripartite-GraphRAG via Plugin Ontologies, https://arxiv.org/abs/2504.19667
Natalie Abreu, Edwin Zhang, Eran Malach, Naomi Saphra, 25 Aug 2025, A Taxonomy of Transcendence, https://arxiv.org/abs/2508.17669
Aarush Kumbhakern, Saransh Kumar Gupta, Lipika Dey, Partha Pratim Das, 4 Sep 2025, Towards an Action-Centric Ontology for Cooking Procedures Using Temporal Graphs, https://arxiv.org/abs/2509.04159
John Wentworth, David Lorell, 4 Sep 2025, Natural Latents: Latent Variables Stable Across Ontologies, https://arxiv.org/abs/2509.03780
Barbara Gendron (LORIA, UL), Ga\"el Guibon (LIPN, LORIA), Mathieu D'aquin (LORIA, UL), 5 Sep 2025, Towards Ontology-Based Descriptions of Conversations with Qualitatively-Defined Concepts, https://arxiv.org/abs/2509.04926
Heinke Hihn, Dennis A. V. Dittrich, Carl Jeske, Cayo Costa Sobral, Helio Pais, and Timm Lochmann, 5 Sep 2025, Ontology-Aligned Embeddings for Data-Driven Labour Market Analytics, https://arxiv.org/abs/2509.04942
Cosmin-Andrei Hatfaludi and Alex Serban, 5 Sep 2025, Foundational Models and Federated Learning: Survey, Taxonomy, Challenges and Practical Insights, https://arxiv.org/abs/2509.05142
Alice Schiavone (1 and 2), Marco Fraccaro (3), Lea Marie Pehrson (1, 4 and 5), Silvia Ingala (4 and 6), Rasmus Bonnevie (3), Michael Bachmann Nielsen (5), Vincent Beliveau (7), Melanie Ganz (1 and 2), Desmond Elliott (1) ((1) Department of Computer Science, University of Copenhagen, Denmark, (2) Neurobiology Research Unit, Copenhagen University Hospital, Denmark, (3) Unumed Aps, Denmark, (4) Department of Diagnostic Radiology, Copenhagen University Hospital, Denmark, (5) Department of Clinical Medicine, University of Copenhagen, Denmark, (6) Cerebriu A/S, Denmark, (7) Institute for Human Genetics, Medical University of Innsbruck, Austria), 29 Aug 2025, MOSAIC: A Multilingual, Taxonomy-Agnostic, and Computationally Efficient Approach for Radiological Report Classification, https://arxiv.org/abs/2509.04471
Samira Khorshidi, Azadeh Nikfarjam, Suprita Shankar, Yisi Sang, Yash Govind, Hyun Jang, Ali Kasgari, Alexis McClimans, Mohamed Soliman, Vishnu Konda, Ahmed Fakhry, Xiaoguang Qi, 4 Sep 2025, ODKE+: Ontology-Guided Open-Domain Knowledge Extraction with LLMs, https://arxiv.org/abs/2509.04696
Hudson de Martim, 26 Aug 2025, An Ontology-Driven Graph RAG for Legal Norms: A Hierarchical, Temporal, and Deterministic Approach, https://arxiv.org/abs/2505.00039
Felix N\"utzel, Mischa Dombrowski, Bernhard Kainz, 27 Aug 2025, Ontology-Based Concept Distillation for Radiology Report Retrieval and Labeling, https://arxiv.org/abs/2508.19915
Generoso Immediato, 26 Aug 2025, Epistemic Trade-Off: An Analysis of the Operational Breakdown and Ontological Limits of "Certainty-Scope" in AI, https://arxiv.org/abs/2508.19304
Samah Alkhuzaey, Floriana Grasso, Terry R. Payne and Valentina Tamma, 27 Aug 2025, Evaluating the Fitness of Ontologies for the Task of Question Generation, https://arxiv.org/abs/2504.07994
Mohsen Nayebi Kerdabadi, Arya Hadizadeh Moghaddam, Dongjie Wang, Zijun Yao, 29 Aug 2025, Multi-Ontology Integration with Dual-Axis Propagation for Medical Concept Representation, https://arxiv.org/abs/2508.21320
Maijunxian Wang, Ran Ji, 2 Sep 2025, AGI as Second Being: The Structural-Generative Ontology of Intelligence, https://arxiv.org/abs/2509.02089
Aryan Amit Barsainyan, Jing Yu Lim, Dianbo Liu, 1 Sep 2025, Toward a Unified Benchmark and Taxonomy of Stochastic Environments, https://arxiv.org/abs/2509.01793
Luca Cotti, Anisa Rula, Devis Bianchini, Federico Cerutti, 26 Aug 2025, Enabling Transparent Cyber Threat Intelligence Combining Large Language Models and Domain Ontologies, https://arxiv.org/abs/2509.00081
Songhui Yue, 29 Aug 2025, LLM-based Triplet Extraction for Automated Ontology Generation in Software Engineering Standards, https://arxiv.org/abs/2509.00140
Peter Stockinger (ESCOM, PLIDAM, Inalco, CIS), 1 Sep 2025, Animer une base de connaissance: des ontologies aux mod{\`e}les d'I.A. g{\'e}n{\'e}rative, https://arxiv.org/abs/2509.01304
Theodor Stoecker, Samed Bayer, and Ingo Weber, 28 Aug 2025, Bias Mitigation for AI-Feedback Loops in Recommender Systems: A Systematic Literature Review and Taxonomy, https://arxiv.org/abs/2509.00109
Khalid M. Saqr, 2 Sep 2025, A Novel Kuhnian Ontology for Epistemic Classification of STM Scholarly Articles, https://arxiv.org/abs/2002.03531
Shriyank Somvanshi, Md Monzurul Islam, Syed Aaqib Javed, Gaurab Chhetri, Kazi Sifatul Islam, Tausif Islam Chowdhury, Sazzad Bin Bashar Polock, Anandi Dutta, Subasish Das, 31 Aug 2025, A Comprehensive Survey on Bio-Inspired Algorithms: Taxonomy, Applications, and Future Directions, https://arxiv.org/abs/2506.04238
Chengshuai Zhao, Riccardo De Maria, Tharindu Kumarage, Kumar Satvik Chaudhary, Garima Agrawal, Yiwen Li, Jongchan Park, Yuli Deng, Ying-Chih Chen, Huan Liu, 3 Sep 2025, CyberBOT: Towards Reliable Cybersecurity Education via Ontology-Grounded Retrieval Augmented Generation, https://arxiv.org/abs/2504.00389
Aleksandr Boldachev, 11 Sep 2025, Executable Ontologies: Synthesizing Event Semantics with Dataflow Architecture, https://arxiv.org/abs/2509.09775
Hanna Abi Akl, 12 Sep 2025, Investigating Language Model Capabilities to Represent and Process Formal Knowledge: A Preliminary Study to Assist Ontology Engineering, https://arxiv.org/abs/2509.10249
Teresa Salazar, Helder Ara\'ujo, Alberto Cano, Pedro Henriques Abreu, 12 Sep 2025, A Survey on Group Fairness in Federated Learning: Challenges, Taxonomy of Solutions and Directions for Future Research, https://arxiv.org/abs/2410.03855
Lukas Laakmann, Seyyid A. Ciftci, Christian Janiesch, 19 Sep 2025, A Nascent Taxonomy of Machine Learning in Intelligent Robotic Process Automation, https://arxiv.org/abs/2509.15730
Natallia Kokash, Bernard de Bono and Tom Gillespie, 19 Sep 2025, Ontology Creation and Management Tools: the Case of Anatomical Connectivity, https://arxiv.org/abs/2509.15780
Xinyu Zhang, Pei Zhang, Shuang Luo, Jialong Tang, Yu Wan, Baosong Yang, Fei Huang, 13 Sep 2025, CultureSynth: A Hierarchical Taxonomy-Guided and Retrieval-Augmented Framework for Cultural Question-Answer Synthesis, https://arxiv.org/abs/2509.10886
Haoye Tian, Chong Wang, BoYang Yang, Lyuye Zhang, Yang Liu, 17 Sep 2025, A Taxonomy of Prompt Defects in LLM Systems, https://arxiv.org/abs/2509.14404
Tom Westermann, Malte Ramonat, Johannes Hujer, Felix Gehlhoff, Alexander Fay, 18 Sep 2025, Automatic Mapping of AutomationML Files to Ontologies for Graph Queries and Validation, https://arxiv.org/abs/2504.21694
Pranav Pawar, Kavish Shah, Akshat Bhalani, Komal Kasat, Dev Mittal, Hadi Gala, Deepali Patil, Nikita Raichada, Monali Deshmukh, 10 Sep 2025, Interpretable Physics Reasoning and Performance Taxonomy in Vision-Language Models, https://arxiv.org/abs/2509.08270